miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|22484013|gb|BU043936.1|BU043936 ACAACATGGGCAGCATCAATGCAGTGACGTTGGTGAAGGTGATCATGGATGGCGCACCCTACCTTCTCAAAGTGGACTTG
AAGATGTACAAGAGTAACCCTGAGCTCTCTGATGCCCTAGCCAAAATGTTCGGCTCCTTCGCCATCGGAAACTGTGGATC
CCAAGGAATGAATGATTTCATGAATGAAAGCAAGCTGATGGATGTGCTCAAGGGTTCTGATTACATTCCAACATATGAAT
ACAAGGATGGTGATTGGATGCTGGTTGGCGATGTCCCATGGGAGATGTTTGGTGAATCATGCACGAGATTGCCCATAATG
AAGGGCCAAGATGCTGATGGGCTGGCACCAAGGGCCTTGGATATATGCGAGAACAGAAGCTACAAGCGCTTACCAATGAA
TCACCAGAGCCTGCTCCTTTGATCTCTTCGTGGTGGCTGCATTAAACACTTCCACCCAACACGGCGCACCGCCCATATAG
ATTT




Most similar to sp|O24407|IAA16_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis
           thaliana GN=IAA16 PE=2 SV=1
          Length = 236

 Score =  182 bits (461), Expect = 1e-45
 Identities = 86/119 (72%), Positives = 100/119 (84%)
 Frame = +3

Query: 24  VTLVKVIMDGAPYLLKVDLKMYKSNPELSDALAKMFGSFAIGNCGSQGMNDFMNESKLMD 203
           V  VKV MDGAPYL K+DLK+YK+  +LS+AL+KMF SF IGN G QGM DFMNESKL+D
Sbjct: 118 VAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLID 177

Query: 204 VLKGSDYIPTYEYKDGDWMLVGDVPWEMFGESCTRLPIMKGQDADGLAPRALDICENRS 380
           +L GSDY+PTYE KDGDWMLVGDVPWEMF +SC R+ IMKG +A GLAPRAL+ C+NRS
Sbjct: 178 LLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236